| AgriPerceiver: A Parameter-Efficient Vision-Language Model for Structured Macroscopic Crop Phenotyping [Paper Link] [Poster Session 1] |
| AMR-Bench-mini: A Diagnostic Benchmark for Agentic Mechanistic AMR Reasoning under Evidence Insufficiency [Paper Link] [Poster Session 1] |
| ARO: Aligned Representation learning for multi-Omics data [Paper Link] [Poster Session 1] |
| Auditing a Multi-Modal Chromatin Foundation Model with Sparse Autoencoders [Paper Link] [Poster Session 1] |
| Auditing Generative Graph Foundation Models for Connectomics: A Score × Predictor × Sampler Decomposition on Real Sparse Directed Connectomes [Paper Link] [Poster Session 1] |
| Beyond Nativeness: Viral Proteins in Protein Language Models [Paper Link] [Poster Session 2] |
| Biophysics-Guided Genomic Foundation Models via Attention Gating [Paper Link] [Poster Session 1] |
| Bolek: A Multimodal Language Model for Molecular Reasoning [Paper Link] [Poster Session 2] |
| Causal-IQD-DTA: Counterfactual Interaction-Quality Disentanglement for Robust Drug–Target Affinity Prediction [Paper Link] [Poster Session 2] |
| Cell Painting Generates Single-Cell Transcriptomics via Conditional Diffusion [Paper Link] [Poster Session 1] |
| ConfPert: Distribution-Free Conformal Coverage for Single-Cell Perturbation Predictors [Paper Link] [Poster Session 1] |
| Contrastive Learning for Gene Set Enrichment Analysis Post-Processing [Paper Link] [Poster Session 1] |
| Cross-modal transfer learning for mapping bulk transcriptomes at cellular level [Paper Link] [Poster Session 2] |
| DELBERT-2: Pretrained Fingerprint Language Models for DEL Protein Binder Prediction [Paper Link] [Poster Session 2] |
| Detecting Sparse Colorectal Cancer Signals from Multi-Modal Cell-Free DNA Representations Using Modern Hopfield Attention [Paper Link] [Poster Session 1] |
| Do Clinical VLMs Need Dense Visual Tokens? Probing Spatial Grounding in Radiology Report Generation [Paper Link] [Poster Session 2] |
| DrugAgent: Reliable Multi-Agent Aggregation under Conflicting Biomedical Evidence [Paper Link] [Poster Session 2] |
| E1: Retrieval-Augmented Protein Encoder Models [Paper Link] [Poster Session 2] |
| Empirical Observations on Parameter Scaling in Chemical Language Models [Paper Link] [Poster Session 1] |
| ERVNet: A Three-Module Framework for Predicting Endogenous Retrovirus Reactivation, Gene Propagation, and Immunogenicity [Paper Link] [Poster Session 1] |
| esm-bind: How much protein–RNA binding signal is already in frozen ESM-2 + RNA-FM representations? [Paper Link] [Poster Session 1] |
| Exploring Set-Aggregated Genome Embeddings for Microbiome Abundance Prediction [Paper Link] [Poster Session 1] |
| Few-Shot Biomedical Image Classification by Alignment of Independently Pretrained Encoders [Paper Link] [Poster Session 2] |
| Gene-Embedding Perturbation Operators for Zero-Shot and Transferable Prediction of Transcriptional Responses [Paper Link] [Poster Session 1] |
| Generalization of Protein Foundation Models for Engineered Fluorescent Biosensors [Paper Link] [Poster Session 1] |
| GeneZip: Region-Aware Compression for Long Context DNA Modeling [Paper Link] [Poster Session 2] |
| GFETM: Genome Foundation-based Embedded Topic Model for scATAC-seq Modeling [Paper Link] [Poster Session 1] |
| Group Contrastive Learning for Weakly Paired Multimodal Data [Paper Link] [Poster Session 2] |
| HealthBot: An Open-Source AI Assistant for Longitudinal Personal Health Management [Paper Link] [Poster Session 2] |
| HistoTx: Early fusion of H&E images and spatial transcriptomics at varying spatial transcriptomics resolution with self-supervised learning [Paper Link] [Poster Session 1] |
| How Do Medical MLLMs Fail? A Study on Visual Grounding in Medical Images [Paper Link] [Poster Session 1] |
| ImmunoFoundation: A Multimodal Foundation Model for Immunogenicity Prediction and Peptide Optimization [Paper Link] [Poster Session 1] |
| Is PEFT Enough for Cell Segmentation? An Empirical No-Go Result on Frozen Foundation Models [Paper Link] [Poster Session 1] |
| Learning Protein Fitness Landscapes with Multimodal Stability Priors [Paper Link] [Poster Session 2] |
| Lightweight Alignment of Unimodal Foundation Models for Metabolite Identification [Paper Link] [Poster Session 2] |
| LLMs Can Learn the Language of the Microbiome [Paper Link] [Poster Session 2] |
| Local-Atlas Control-Anchored Flow Matching for Unpaired Single-Cell Perturbation Prediction [Paper Link] [Poster Session 2] |
| Marking the Wrong Symptoms: Evaluating LLM Watermarks in Medical Texts [Paper Link] [Poster Session 1] |
| Mechanistic Synergy in Multi-Modal VEP: DNA Context Complements PLMs under Biophysical Constraints [Paper Link] [Poster Session 1] |
| Medmarks: An Open-Source LLM Benchmark Suite for Medical Tasks [Paper Link] [Poster Session 1] |
| MESH-HR: Multimodal Fusion of Somatic DNA Profiles and Histopathology for Continuous Breast Cancer Receptor Subtyping via LLM-Assisted Annotation [Paper Link] [Poster Session 2] |
| Mode-Aware Phenotype Profiling from Korean Clinical Reports: An LLM-Derived Two-Layer Fingerprint for Autism Characterization [Paper Link] [Poster Session 2] |
| MolEmb: Multimodal Large Language Models Can Be Strong Molecular Embedding Models [Paper Link] [Poster Session 2] |
| Neuro-Anatomy–Informed Self-Supervised Learning for Structural Brain MRI [Paper Link] [Poster Session 2] |
| OmicsDefense: The First Unified Framework for Defending Against Backdoor Attacks in Single-cell Foundation Models [Paper Link] [Poster Session 1] |
| OmicsLM: A Multimodal Large Language Model for Multi-Sample Omics Reasoning [Paper Link] [Poster Session 1] |
| PaCX-MAE: Physiology-Augmented Chest X-Ray Masked Autoencoder [Paper Link] [Poster Session 2] |
| PaSTel: Anchoring Histology in Spatial Transcriptomics via Multi-Scale Hierarchical Bio-Prior Contrastive Pretraining [Paper Link] [Poster Session 1] |
| PertReasonQA: A Knowledge-Grounded Benchmark and Framework for Cell-State–Conditioned Mechanistic Reasoning of Perturbation Effects [Paper Link] [Poster Session 1] |
| PerturbDiff: Functional Diffusion for Single-Cell Perturbation Modeling [Paper Link] [Poster Session 2] |
| Position: AI for Drug Discovery Models Often Do Not Learn as Expected and How to Diagnose These Failure Modes [Paper Link] [Poster Session 1] |
| Position: Multi-Modal LLMs for Video Behavioral Coding in High-Stakes Decision-Making Are Bounded by Polysemy, Not by Model Scale [Paper Link] [Poster Session 2] |
| Position: Multi-Omics Foundation Models Need a Modality Identifiability Standard, Not Just Aggregate Accuracy [Paper Link] [Poster Session 1] |
| Position: Saturation in Single-Cell Foundation Model Benchmarks Signals Identifiability Failure, Not Solved Capability [Paper Link] [Poster Session 2] |
| Position: Saturation in Single-Cell Foundation Model Benchmarks Signals Identifiability Failure, Not Solved Capability [Paper Link] [Poster Session 2] |
| Pre-training on noncovalent interactions from synthetic protein-ligand structures to better predict binding affinity [Paper Link] [Poster Session 1] |
| Predicting host-pathogen interactions using a proteome-scale language model [Paper Link] [Poster Session 1] |
| PRIMA: a bidirectional state-space architecture and training approach for sequence modelling of protein-protein interactions [Paper Link] [Poster Session 2] |
| Probing, Fusion, and Trustworthiness: A Systematic Evaluation of Foundation Model Representations for Multimodal Cancer Analysis [Paper Link] [Poster Session 2] |
| ProSAM: Modular and Energy-Guided Fine-Tuning of Protein Language Models for Structure Prediction [Paper Link] [Poster Session 2] |
| ProteinJEPA: Latent prediction complements protein language models [Paper Link] [Poster Session 2] |
| ProteomeLM: A Proteome-Scale Language Model Enables Accurate and Rapid Prediction of Protein-Protein Interactions and Gene Essentiality Across Taxa [Paper Link] [Poster Session 1] |
| PROTEUS: Predicting How Post-Translational Modifications Alter Drug Binding Affinity [Paper Link] [Poster Session 2] |
| ProtQueSt: Query-Conditioned Retrieval-Augmented Generation for Protein Function Annotation [Paper Link] [Poster Session 2] |
| ProtSent: Protein Sentence Transformers [Paper Link] [Poster Session 1] |
| Retrieval-Augmented Foundation Model Enhances Risk Prediction Using Electronic Health Records [Paper Link] [Poster Session 2] |
| SaNano - Structure Aware Transfer Learning For Data Limited Protein Modality [Paper Link] [Poster Session 1] |
| Search, Edit, and Fold: LLM-Guided MSA Optimization for Protein Conformation Prediction [Paper Link] [Poster Session 1] |
| Selective Benefits of Sequence-Drug Multimodal Learning for Antimicrobial Resistance Prediction [Paper Link] [Poster Session 1] |
| SIGMMA: Hierarchical Graph-Based Multi-Scale Multi-modal Contrastive Alignment of Histopathology Image and Spatial Transcriptome [Paper Link] [Poster Session 2] |
| Single-Cell Cross-Modal Transfer by Adversarial Fine-Tuning of Foundation Models [Paper Link] [Poster Session 2] |
| Structural Bottleneck Reasoning: Efficient Medical VQA via Concept Alignment [Paper Link] [Poster Session 2] |
| Survival-Relevant Directional Pathology–Omics Discordance from Frozen Whole-Slide Foundation Embeddings [Paper Link] [Poster Session 1] |
| Synergy-Aware Contrastive Pretraining for Co-recorded Physiological Signals [Paper Link] [Poster Session 1] |
| The Hallucination Dependence Index: A Cross-Condition Diagnostic for Clinical-LLM Faithfulness [Paper Link] [Poster Session 2] |
| Transcriptomics-Conditioned Virtual Tissue Synthesis via Diffusion Transformers [Paper Link] [Poster Session 2] |
| Transferable Lesion-Supervised Speech Representations for Post-Stroke Modelling [Paper Link] [Poster Session 1] |
| TriFit: Trimodal Fusion with Protein Dynamics for Mutation Fitness Prediction [Paper Link] [Poster Session 1] |
| Uncovering evolutionarily remote and highly potent antimicrobial peptides with protein language models [Paper Link] [Poster Session 2] |
| VFUSE: Virulent Feature Understanding with Sparse autoEncoders [Paper Link] [Poster Session 2] |
| Virtual Cell Models Inflate Perturbation Effect Sizes and Undermine Causal Gene Regulatory Network Recovery [Paper Link] [Poster Session 2] |
| VirtualCeLLM: A Comprehensive Benchmark and Guidance for Large Language Models in Cellular Biology [Paper Link] [Poster Session 1] |
| WACA-DTA: Water-Aware Geometric Biases for Structure-Conditioned Drug-Target Affinity Prediction [Paper Link] [Poster Session 2] |
| What Makes a Virtual Cell a World Model? Three Gaps, Three Axes, and a Roadmap [Paper Link] [Poster Session 2] |